Scaffold Ga0181423_1033993

Overview

Basic Information

• Taxon OID: 3300017781
• Scaffold ID: Ga0181423_1033993
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2065
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021778	Metagenome / Metatranscriptome	217	N
F023859	Metagenome / Metatranscriptome	208	N
F077965	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181423_10339934	F021778	GGAGG	MGMPKFLEDYVTVDTLISKMNTEYPNCRLVAEMVDNGDDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIIPSKDEAPKKSIEKELEKAGIEYEDVSVSQTHIINNIKSFAMDVANDNKANAANWYAQALGELDIPEAKLTIDNMKSVKNKLQDIATNLQVGDA
Ga0181423_10339936	F023859	AGGA	MKKVIVKFIGVKKYLVSDNADPEKIKSMFKKDLELLPPVWANNIEAVMYAKDEPEAEEE
Ga0181423_10339937	F077965	GAGG	VIELFIGCSLLLQVEITEQSIDDYFLCNHLQDVKQWYYKTEQHFGVDTLFALAVMSCESDGRANA