Scaffold Ga0181346_1016579

Overview

Basic Information

• Taxon OID: 3300017780
• Scaffold ID: Ga0181346_1016579
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3108
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. 43A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014837	Metagenome / Metatranscriptome	259	Y
F015354	Metagenome / Metatranscriptome	255	Y
F035672	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181346_10165791	F014837	N/A	NQPTGFERNSPLRPGDLLPMIQRTINPKPRFVTLVSALPFVGAPLGTLHRTAFFNFPQDSVIHYASINSTFSIDGAFAQVTGAVAYGQNETTITSILGAGLENFSDGIIWRDELLNPAAGTISDSKSNQIMFNEFFVHAGTIIGIYANGIGGNARINATIAFNPIAEWVNFREPTSGARV
Ga0181346_10165794	F035672	N/A	MPNLPETLRDLGIGVGGPAGGLLVANIVPDPMIAHLSVTLGALAALSVIIKNVLDIWNNRNK
Ga0181346_10165795	F015354	GGA	MNPNLSSLIRHGLTAAGGFLVAKGLASADQVGELVGAVATIIGTVWSIWKNRKPITPPA