Scaffold Ga0181346_1006443

Overview

Basic Information

• Taxon OID: 3300017780
• Scaffold ID: Ga0181346_1006443
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5101
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027415	Metagenome / Metatranscriptome	194	Y
F047648	Metagenome	149	Y
F051879	Metagenome / Metatranscriptome	143	Y
F083937	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181346_100644311	F027415	GAG	MMDLGKLKEFVMNDNVFTVSVLLAFICLIGSVTFYQYSELKSVERNVESAIVKGIDPIAVRCAYASERDVVCVAYAASHNTQPSTKK
Ga0181346_10064432	F083937	AGG	MGKTYHKQPKRFEDEQTSGRSGKHAKHSNGRKSGGMKTLNSYVDDDYDSFDDEVELSDEIQIQHTKNTP
Ga0181346_10064435	F051879	AGG	MNLNEKYNSLQIEKMKLDKFFSMFLEKFERKMDSDKTDTPIWKLYKTKLKEYDKVSQELKNTEYWIKKEQNVSYI
Ga0181346_10064436	F047648	AGGA	MSEFCVKCSDLESQMELLRKSHYEEIQCMKAKIAKLQNENEALVMDVAFYGGNLINLSCNEK