Scaffold Ga0181346_1000800

Overview

Basic Information

• Taxon OID: 3300017780
• Scaffold ID: Ga0181346_1000800
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13944
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F012668	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181346_100080012	F012668	N/A	MTIKRYENVKVRNVTNGVNSLGEYTTALTEWFESRALVNDVSNTLLISERYRLYSDLVQFMFNYTPNMKTIVDDQNQYSFFWRGKDWRISDCRETNDRQFVTFTCYRNDPTTPV
Ga0181346_10008003	F002085	N/A	MNIIAPVDNTNNIRYADFVRVTTPSATYRFATTPSALTIPAVDPQPFNAVGQLMRVGEAQRDIKSTANETTFTLVGIDTAMLGWVLGQEVKGAQIEAWHGFFNTNGALITSGGTGGLYQFFNGYVNSFSINEQWMEEARQFVGVITVSASSIQLILKNRTAGRYTNNNSWQFFNDGDTSMNRVAFVSTINYFFGKGAEPNS
Ga0181346_10008004	F000934	AGCAGG	MSLNQILAISESVGINDQRFVGQMISRNQRISTSEIMTVVPFAFEMKPMQYLYYSQNRGLLNSLRIPDKALEQYLNFGATGWINYIEYQGDMNSGEIDACAWQTASANKTLVLGSLPTMGAGEYIVRAGDFCQVGRYTYIATNDVVRGSGSTVNIPVHRNLITTLTSPVGAVIGQYGTTVSLGGDSYIGVTFPVILREYPTYTLMPITNDSFISWSGSFNAFESVL