Scaffold Ga0181346_1000747

Overview

Basic Information

• Taxon OID: 3300017780
• Scaffold ID: Ga0181346_1000747
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14338
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F011222	Metagenome / Metatranscriptome	293	N
F025459	Metagenome	201	N
F035667	Metagenome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181346_100074716	F035667	GAG	MEELPFAAGLQLLHADDYVNGRHSAWANNSASVNVDALATIEDTLAKYGKIQIRELEV
Ga0181346_100074718	F011222	N/A	MPLAPRQKGAAFLYMEPNKRFFHTINLKCAVALATLGFKMNKPPVTRLVRTDGKESTEFWFEGENDKGQDASQVYRQMTKEGDELEEKDPENPLCYIRAALANRDVLVDIIRNTPRLIEVEHNGKRIAISENASDKTKQEMTRFLK
Ga0181346_100074725	F008495	N/A	CREISGTILHVLNILIVYHLRLGDIARCLPIAKHFADQGHNVMFECLPEYHGLFAMVDYCKPLYPQNDHSGFHRIINLQIWPDLHEDFCASPLGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELRSWVLCFPTGYSQDKKIDPRDVIAAAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDANEVVTINTSTSILASALRKSWVHIADSPKHDFTHPNQRRIERKF
Ga0181346_10007474	F025459	AGAAG	MTLEFDETERYEHEVACKALDILILVDDIDQELRSALKHESGAFAKLDEDTMEAVRAWIWEQRSDRNIPELR