NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181346_1000096

Scaffold Ga0181346_1000096


Overview

Basic Information
Taxon OID3300017780 Open in IMG/M
Scaffold IDGa0181346_1000096 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34508
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (76.60%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F011148Metagenome / Metatranscriptome294Y
F012668Metagenome / Metatranscriptome278Y
F067746Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0181346_100009616F000934GAGGMSLTSILSISETVSINDHRFIGQMLSRNQRITTSEILTVVPFEFGLKPMSYLRYSESRSLLNSLRIPDKALEQYLNFGATGWINYIKYQGDMSSGQISACQWQTASADKTLVLGSLPSISSTAYVVKAGDFCQVGRYSYIATADVIRGSSSTVNIPVHRNLITAVTSPINAVIGQYGTTVAMGGSSYTGTTFPVILRDYPTYTLVPITNDSFIQWSGDFKALESVL
Ga0181346_100009622F011148AGGMAVFNKNTLTQISGFDNQIIAGELVWEQNTFWNLTLNDSDGNPLDLTYASIDAQIIRRTLTNVRDSRYGLTFDIGDYTPTPTAIPLTIENKDNLTGTFTLVIDDGAWGLIANQPELDINSVNGAGFSGRIKVSFPSIGSTPANDMIIFLLFIVRSDAIINV
Ga0181346_100009625F067746AGGMDETEARLNSHEAVCAVRYEAINARLKRLEQILIATAGFLIVTLLALKFH
Ga0181346_10000968F012668N/AMAIARYENVNVNDVTNGVNDFGAQTTTSTLRFVTRARVADVSNSVMISEKYRVYSDLVNLTFNYTPWIKDIVDNQNLYSITWRGFDWRIADIREANDRMSVTLLCYRNDPGTSV
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