Scaffold Ga0181346_1000004

Overview

Basic Information

• Taxon OID: 3300017780
• Scaffold ID: Ga0181346_1000004
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110276
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (20.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069833	Metagenome / Metatranscriptome	123	Y
F093295	Metagenome	106	N
F099304	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181346_100000454	F069833	N/A	MTAYNRILDKQDNQLYKKVGRRYIPASDIWAYEGLREGWWLVKVAPGSTSIRQQVYPSRSEISAAARDKEDELIKIIREASEARPSKRPLTPEALADWQAFIAKHGEQFNTLEYPSIQENAEKIIEALLK
Ga0181346_100000471	F099304	N/A	MKHTIQFVSELTEAEVRQLLFDIYERVPITGEDLSYAALPDKITRYVNEANRLSSLEEVVTQYIVEECCNGNIGVQDPINFLIGSHRMLRYNLHDTWKEEY
Ga0181346_100000474	F093295	GGAG	MIKRIFQDLDECILHTTVNNDPGQTHVEFMLPEDVHTYRTIIRPCAKDLFAYYNDLIGKENVYILTTATREYAEALNRLGEFGLDYAHIFTREDIQQYKISFGYGGEGVMKMPIADKDNVLIDNLPPRYNCDKMDMMGIVTKNYHQTPEYYGNNLNDEDFFENIKKFLKDRL