NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181395_1009590

Scaffold Ga0181395_1009590


Overview

Basic Information
Taxon OID3300017779 Open in IMG/M
Scaffold IDGa0181395_1009590 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3443
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020174Metagenome225Y
F023580Metagenome209N
F030437Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0181395_10095902F030437N/AMSHSQEENWVTGKTHTRSASAYRTSIWTPVNHEDFYKNRQKYIDAGWQSYCWTKGAEGYDKYFVSKLPKDEFEHLLMVEKKYAYYTLFFHIDED
Ga0181395_10095903F020174GAGMHITPCFFTSMKIKPFKMDEIKEDVLKYWDWAQEEFKGEDIDRLRFEVESAVTNLNRHINNEFRRKAMGKTDMRSK
Ga0181395_10095906F023580AGGMNNIKLFLVRNYGSTLGAAETLDVTPNTVRNWCGRSPRNILKHLPEISESCGATYAEIVEEVLICEREGVE

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