Scaffold Ga0181349_1008154

Overview

Basic Information

• Taxon OID: 3300017778
• Scaffold ID: Ga0181349_1008154
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4389
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058819	Metagenome / Metatranscriptome	134	N
F060725	Metagenome	132	N
F090088	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181349_10081542	F090088	N/A	MMEDKEALGKKVFLEFYSTFILDDEIEETGRVFYLAQKASMIHLKLIRGILQNDEYIINMAYLKDVINKIKI
Ga0181349_10081543	F060725	N/A	MIKLFIGGQEVDLNQDEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFFAANFKVSLIGNNADWFADVGNTLVRDLGWSTIEVSKTTVKVNYNPVTSEFCFILMKWKAWENETYILYNELTPAIFIWQILEKAFKDKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNLRASNPSPSSFVYSAGDNGTINITFTDETTSPNFDTGGNYTGGTYTVPINALYELIAELNVTLTATIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSIILEFLGDLVAGDTVKLRLRYENVSFNLSIAGSLSVVAEKEGLETGETVNLQYIIPISWYVRDIISDLTTIFNLAWETDVLNRQVYSYPKDDYTIRYRANSTGAASLTSFDGFFKGSNKYDLNTRDVEGSDFQVLDGYKSTQVLAYATDDDTTNKEEERRGVNIYSGGYNFPTDRFDNGVEFIYTNFFAKAIHINDVEITTGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGYIRLYDDTSSASSAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYSTFVKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNTNDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIIGGSTISINVDTHYDGANYEVVVNGVTKG
Ga0181349_10081544	F058819	N/A	LSIGAANIFGSTAVFHAGNFPLSSSAYSFYEVSVGNYTGSYERRSEKIQVNIEPNCNDNIDLHWFGKYGGAESYQFRGLIQDLQTANADIINISQPWNVAASPRANSFDKTIIKTNQRVNKKKQVKCNIPHEDAVYVASMFYSPEVYIIENGKYVNVTISNAETLTDNNRATDIEVNFEITYPNKPTAQL