Scaffold Ga0181349_1006574

Overview

Basic Information

• Taxon OID: 3300017778
• Scaffold ID: Ga0181349_1006574
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4892
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028146	Metagenome	192	N
F081254	Metagenome	114	N
F085379	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181349_100657411	F085379	GGAGG	MSARPNPKSEVIDEMVARFAPFKEILAAVRMQQAAVRQRIYNRGYRREYITHEER
Ga0181349_10065745	F081254	N/A	MTDQQADQIIAELRAIRALLSTKPAAPAAASAPAPAGAPKDIPQPTEIVADPGSVEVHFGKNKGTALRSLGAKSVEWYAQEPEPRIGNNGKPFPPRAEDVRLRNAARQLVHGNRGTLAAGSKVTLVTETLTEEVPF
Ga0181349_10065747	F028146	N/A	METTHEIKKAAVIAAAAEQVRSLLETHYDAMRKAAEDSFVDDESQAEPKAKASFVIEWDALAMAPTVRVKVGWSVRFKDESEAVVDPLQAKLEIGGAE