Scaffold Ga0181357_1071530

Overview

Basic Information

• Taxon OID: 3300017777
• Scaffold ID: Ga0181357_1071530
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1334
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032950	Metagenome	178	Y
F058678	Metagenome	134	Y
F095169	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181357_10715302	F058678	AGGA	MKEESTPRLRKEMTKNGRGVSAKLTESEYKEWVKLGKGKWLRSLLKDSKFEREKHDTTTQSF
Ga0181357_10715304	F095169	N/A	MNWRELTIKYVKDLLRARTPLEVAEKELVEAQHSKMQGETSVEYSQSIVAYNDKRIHRLTHIIAELKGEYHD
Ga0181357_10715305	F032950	N/A	MNTIIKVIIAVACAASLMYFDSLDFKPREKTNVGNSILGTSDGSFRVRFGGLRLHRVCVVPTKQGRRVVKCPVCEWTRTPDNRYMCKKIQRIIVVSHLKKRVKT