Scaffold Ga0181357_1023707

Overview

Basic Information

• Taxon OID: 3300017777
• Scaffold ID: Ga0181357_1023707
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2437
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 108

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F009318	Metagenome / Metatranscriptome	319	Y
F065484	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181357_10237072	F001345	N/A	VNAESIVLDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKILKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQELGKDYDSLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIEANGYTGFSNPD
Ga0181357_10237077	F009318	N/A	MARLLLLLLLTACTNDRPWKVIEVRAKGDACEYVLSRSNGFGPQIKTLTDTCGRYRLFQTIRNRV
Ga0181357_10237078	F065484	N/A	EKGKQSLSQKWWQGVVQDAGYRYEVIRSIEDFQRVVASVE