NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181394_1124110

Scaffold Ga0181394_1124110


Overview

Basic Information
Taxon OID3300017776 Open in IMG/M
Scaffold IDGa0181394_1124110 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)813
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070570Metagenome123N
F092736Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0181394_11241102F092736GAGGMENKLGLYVSNLMATIVDKEETVFVRKLAFNELENISQDISSFLTSYISEIKPDPFQKEQNKNRNKKQTEINFGVKNENR
Ga0181394_11241103F070570N/AMKIDNEALAELRKIRAAMDNAYDKLNKPLYEKNIAAKVSYKETIPFNLIQENFQFIAKKIKELEESAGVE

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