NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1126885

Scaffold Ga0181432_1126885


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1126885 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)774
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004165Metagenome450Y
F056061Metagenome138Y
F081214Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_11268851F056061N/AEKALQAKIAKEYKLDKAIKRAKWEKEMDEFLNKLAEKNGTTEY
Ga0181432_11268852F081214GAGMAQQNINMNERNYTISKKASDKMWTCEVTNSYGETHTNYFETTRECDEHIYYTWENEVSRAFLKHAGDELLAKAILECKEIDSKNPNLREIL
Ga0181432_11268853F004165GAGMSELNNKHKSKVRRQVDLDLGVKPPKSIIFTSKKIYSRKIKHKKDE

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