Scaffold Ga0181432_1118810

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1118810
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 798
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED123 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002601	Metagenome / Metatranscriptome	544	Y
F021117	Metagenome	220	Y
F049685	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_11188102	F021117	AGAAGG	MGLKRDEMFQATRWLNLLVGLMNIYLYSLGGGYHLLGIAMLNIGVWSFTRGVYK
Ga0181432_11188103	F049685	GGA	MSKNVKDIMAEMLAEWLFKDFGILIDKPSEKEIAETLEEHDKKEVLEDGVKKR
Ga0181432_11188104	F002601	GGA	MIKLIVFSVLLNAGEIVAMPPDDTKIEAGRKRGKGHRGRKRGGSGLR