NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1088833

Scaffold Ga0181432_1088833


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1088833 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)910
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033079Metagenome178Y
F051205Metagenome / Metatranscriptome144Y
F105351Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10888331F105351GGAGMTEVWIALLLYTNSLDAKILQEFTSEQICWEYYAGDQSFGKQLNDHQNKPITKDYHFKKGGAEYPIRLFTDRETKELMWLTCELQAGLDYTRRKYLLNILLPTPA
Ga0181432_10888332F051205AGGAMKKLLLVFIMATWIVGCETSIIGCYGHWVKGPGHHRGTRHMLKDAKLPYYQCVDENKPHNDVQGKRRYL
Ga0181432_10888333F033079GAGMVRSDCYLDDTSMVEIAGNRLVWNHIQKENQRMILDPLGYDPIKDVDELMCRTRRKTDNPLINPTREKMAYHFPKIKDEDRR

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