NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1064626

Scaffold Ga0181432_1064626


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1064626 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1046
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007978Metagenome / Metatranscriptome341Y
F008820Metagenome / Metatranscriptome327Y
F095590Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10646261F007978N/ADRLQGLEGTTISGVYGRIQSVTVKKYDTDPVSWACLYDVVLHNSAVTRNAAGESPEWGNRIRSRRIDHFTCTYDPTSNSNPYAQAYADLKTKLAADDPPIATSIADA
Ga0181432_10646262F008820AGGAGMADLTQYLTQKFTKMITEITVDLGKTADDYARVQNIIRALKNPDMMVDGASLTLDMVQVMENGDIRILPPPPAPAITETCVKEPEKNGKKDAKDLVNAS
Ga0181432_10646263F095590AGGAMQASQQTYEDAQYQAAEPIGEQPPIPAGIHDIELSWDRHKGYMRVIIEGQKYWFKEYLGKAQVLSCDNKRGRLNLRAIAQINGETLTMWRDPNAPPHEEVEGIRREKTHNRLCYRRMTEEWRLRDERLDWNHPDALVFTK

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