Scaffold Ga0181432_1044252

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1044252
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1231
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F014672	Metagenome	261	Y
F057769	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10442522	F057769	GAGG	VTIEVGSIVESTGFVRGYNKSNHGLVISLMADGKIARVFWMATQQSGFCSVKDLKVLT
Ga0181432_10442523	F005547	AGG	MKVWVMQGSYEGEMFSSVHFTQKGCALACISDLMDFHGIDDNETALSVMHNSYVYTDEEKKVKEVTAPIEWDQDKLKEMTSEQLWKVFADWTEISWDRMADRSYNLDANPVEIQA
Ga0181432_10442524	F010950	GGAG	MMNIWVVRQTCLYSNETYLSTHITEKGALMTAIQIVREDLTDGFDEDELEDMRPGMPHHPEEDLKQYGSDQLRGIVDDWWEYSMDMNEHGQYEIHQTQVQG
Ga0181432_10442525	F014672	AGG	MKVGDLARVKDGTHDAGIPSHRIGLIIEHGEASGNYTEAYTVAFLGTNIQLKFHEMFLEIANNESR