Scaffold Ga0181432_1043735

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1043735
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1237
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F008755	Metagenome / Metatranscriptome	328	Y
F009404	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10437351	F009404	N/A	EVSPKGDPIVKYCPIDGVEFSETVLTNRWLKCDSCEQVFQVRTKKGD
Ga0181432_10437352	F008755	N/A	MNKSLVARDFWRKIFNDNLINLSDSDARKQAVREFLNDPVNKKAGWHQKDSRFFRLGFQRVAKENNYNVMSIGVTPQPSRSKTQKGSMNINVKSKQKNPAPMGASIKPPTEEQKKFGALPQTPALEAQQDLAVQYSAQSVGQLCETSLNILFARMNVDPITQNERIALGEAYAPLCNKYLTGHSELIMPALITFPIMLARMAQMAKAKKEKEIQERYGLDNIPKDEPKKKSAWEDMSHGENKTNKK
Ga0181432_10437353	F001594	GGAGG	MEKTKLTKNEYLDSLDPDNLNLTKKDLLDFCHSCIEEWKSNRVGNFKFIVAMELILAGVRLTSEDVLKAVWKKILVWFWDLQYKNALADNESMLKKLREIGSG