Scaffold Ga0181432_1034508

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1034508
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F084099	Metagenome	112	Y
F090254	Metagenome	108	Y
F106167	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10345081	F084099	N/A	GDVVTMNTPLTPERYGLGLIQKIVRARQKSYRLVYHILWPDNTISCQYDNEIVLVSRVK
Ga0181432_10345084	F106167	GGAGG	VEIGDIVKLHINPSVDWMHKYLEETFEVIDFPTETGVLVKMVGTDPDWFWHVGKKEFEIVEKKD
Ga0181432_10345085	F090254	GGAG	MGIEETNYSAIDILNIVDGAELVTIVREIYLCVWHGGNTVDVYDLTTNNEPDYQVLPMFAPRCLLSVHDAIDDYFLELEHDNENDCLTTAPVRVIVETESDAPSEVN
Ga0181432_10345086	F012401	GGAGG	MFNGLLTLEKAALERLTESRIASGSLGEEVEEFLSSAGVYWDEIGQEYFNIETFQEETFERLAAEYGSQDYA