Scaffold Ga0181432_1020730

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1020730
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1697
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001227	Metagenome	742	Y
F038413	Metagenome	166	Y
F055665	Metagenome	138	Y
F059862	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10207301	F038413	AGGA	MAFYRTREGAITAADSFTALGSLYGQSTTASVQVPS
Ga0181432_10207302	F001227	GGAG	MVRRKVRRTRRRKSFSINLLETGAGLAFLDAANAGTAAQQFIGGNIKGGIDTLSNAFKTNKDQFVKVGVATLAAKLVLGSMGGSKVLGSVGPLKLRA
Ga0181432_10207306	F059862	AGG	MNFGLVEQLDRIVETLALSALLQVRPSKKVEKRLKEIAFPLEEIEL
Ga0181432_10207307	F055665	N/A	LLEALEPIVNEIDDRMHEKLEAFQSSFFGSLGAASKKLDQSTGQATIKAVTRDNPILGFVAEYLMKRGNLGSLSGQNSLSNVSEKPKESKKLGLK