Scaffold Ga0181432_1019511

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1019511
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1742
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F049554	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10195111	F049554	AGGTGG	MPHVNGEIEPSKVKSVSVYNVGDYGVDNFLPFTDVGLTETAITFSTAVLTRDTEDSNQPMDDFPAVYSDTDSGILLNEGNNSAFSQTYSYNPDMTAIIYALHLHFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSNAANLTATGTSLHIFQQDVVETILVRKGNPIDIL
Ga0181432_10195112	F001606	GAGG	MTYGYDDVTTTSLGTAVAETQLNSGTSLSAPDPAHAFLAVIPYQSESAAFTVDESLLTAFRIQSDDVAIEPKKFVLPNVNTGDAAFTSVAAPALLPMPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDSPNDVESYYTRPTNETAAATAANTRTEGGSMTIQGGTEIRSLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAVQPTYTGLGSAANAVTGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRT
Ga0181432_10195113	F001712	N/A	TGHDMASSAGQPIATRAQNFINSLSGRITGYNPFPQTGTVPQTISIDGMFNKWSGIGLGAWLYGMLPVKQLPQKGKAKTLGKSLLTGGVLGGLFSTGNPHNTNILSPSPALTVSSSEVSY