Scaffold Ga0181432_1018863

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1018863
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1767
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F008691	Metagenome / Metatranscriptome	329	Y
F093971	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10188631	F093971	N/A	KKDESENFIDTLKDLLADPHQDEAWNDKFKETVRKYFEI
Ga0181432_10188632	F008691	N/A	MPLGYDVKEEATEIKKNLFESRDSFVMLVVAGVVGGIITRFVIPKSVTEGSVFSRFKSWFGYDQEEEEE
Ga0181432_10188633	F003270	N/A	MARKRKRRSSKKKNGSKSIKSMLRQVVNKGAAPLAFWQQLSEKDYQVLNADGNYAALDYLGKLKVAANILTGSLTGRVVFADQYNPSPSGQPRINPAGVINKWTGIGVAAKLYGKIGKSMKLPEAAMIDRVGSKVIFGGAVGGFFDPPGNPGGYVSTANVTPNIMVQNRAQTNRSFATAQSNRSYVPLDSFDSSTGSAFR
Ga0181432_10188634	F008596	GGAG	MSGAWDIATATSLLTGVAKVQINGGNNLTKPTQAVNLVETVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRMIVPPIQAGLGTHINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDDESSFTTATTNAGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLA