Scaffold Ga0181432_1014788

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1014788
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1955
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008649	Metagenome / Metatranscriptome	330	Y
F016323	Metagenome	248	Y
F023448	Metagenome / Metatranscriptome	210	Y
F023958	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10147882	F016323	GGAG	MPGSKKLIDIIDEMNLKEDATNTMVVGKLNRLVSIIFEVDDYSEDVQFVSTIIEDLMSSPHHRITELEIEKCNRLYRQYQ
Ga0181432_10147884	F023448	GGA	MSAANGYNHQTVIDKLIKLNERIAVDPFNDVQEKDLIWCQRLLTDVKESGLVPNKEEFIMANLMWKKYGFLPTDRKSTEENMWKLVDSMLTQENPTKIGAIKMYRRFIDCTLKEAKEMVDAREIKIKRGW
Ga0181432_10147885	F023958	GAGG	MIKAQLTDIIGAYQKLQVAKGAGLDLWEGIILILFILKDIAIVGGILGTIIWYVKGKK
Ga0181432_10147887	F008649	N/A	FDEVKVVSNNTDFSVRVGYWNRIDSSLIETMEEYHSVRITEYDWEDEDCGTLYRYLVEVVDEDSGYTLNELNELESNYTEEAMYLESVGADKTWGNA