Scaffold Ga0181432

Basic Information
Taxon OID	3300017775 Open in IMG/M
Scaffold ID	Ga0181432_1014426 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1976
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

1976

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016597	Metagenome / Metatranscriptome	246	N
F023963	Metagenome / Metatranscriptome	208	Y
F043628	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10144261	F043628	GAG	MAAPTNQGLITEAGLFIVTESGDYIVTESFIEGNQGGGKSKPTEIKKDNDELWEIGASINRVNDNSYREPITTKKYITEENNIKVIVGDNIYLKHPNIITENVTAHLVSNKI
Ga0181432_10144262	F023963	GGAG	MATPSNVHQKSIEFDEVNLFSIDKAVFDWFNTKHPTNVKGRRTPVTFGAWERFAQMQDNKYDDNLNRMRDPSGMLILPMISIRRGDVTYNTDRFVFQQVDGAPRIEISRKVAASNFDADRRVPFDGPHMYSSNRRRSDAPVMEIATVPYPDFVTIPYTITFWASYVRHANYFNDRMWQNAYPTDLTYKGYYFYAFIDSSSNESNEENYTDEERIIRNSFTMTVEGYLLKKNDVNVTRTASKMLMSEGYIEQPAMTTPGYKSIDEIITQESVPAPHQYADPMPPEDSWTNKGSLNTSTPSLADYNANEAELWGNGSTN
Ga0181432_10144263	F016597	N/A	MADNDTVPYTWNGTGNHGTFPFASSTGDADYGLFFTPREMELFNDYNTELLGIVAQTGVHYYRIEADSSDPNSIYGESEVKVTRDPVQVYCWVMLDEPETETNTFTVDVRRRIELYMHKDRLTELDLVPRMGDFVGYDNQYFEIQRLGVPNFVFSYPQTKLGVVARCMSVREGVFDPDRDFVNKEYVGDSENPY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181432_1014426

Overview

Ecosystem & Geography

Associated Families

Sequences