Scaffold Ga0181432_1008098

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1008098
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2499
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F001992	Metagenome	607	Y
F036732	Metagenome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10080981	F036732	N/A	TAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSTLGQ
Ga0181432_10080982	F000730	GAG	LVNELIPSELIPIIWFICISVTGYVFFRVFSSTLKEKFRLTNLSKKKSEATGNTDGQVDSLIDNAPRMLAEVNKIVAEQKSAGVPDEQMKGILQKKQLLELVSNNAEVINIIGKPVLKKLLGFVRAF
Ga0181432_10080983	F001992	GAGG	MVVQSLIAKEVIKKGLKSSREFSVSTLGYDFIGLFIRLAFFLLMGVLVQSYFTATITGGNWLNSVAGFFNIKFPSTLPEWVVKLFTTGYNGVAFWQILQISAILLVLIEYTQYDRMLKEQGQKPNVTTTAVFLMLGLGLSLLVFPSTIQKIKEMRIINGS