Scaffold Ga0181432

Basic Information
Taxon OID	3300017775 Open in IMG/M
Scaffold ID	Ga0181432_1007127 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2635
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

2635

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F027156	Metagenome	195	Y
F029400	Metagenome	188	Y
F048570	Metagenome	148	Y
F058991	Metagenome	134	Y
F090254	Metagenome	108	Y
F106167	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10071272	F012401	GGAGG	MIEGLLSLEKAALERLTESRIASGSLGEEVEEFLSSAGVYWDEIGQEYFSIENFQKEIFERLTQEYINENYA
Ga0181432_10071273	F090254	AGGAGG	MSIPETNYSAREILEIVDGGEFVSILRDKYLVVWDGGSVVNVYDLTDPAKEVDYQVLPMFSPRCMLTVHDAIDDYFDALDFDNENKGLTTAPRRAIVYTESGDITEVN
Ga0181432_10071274	F106167	GGAGG	VEIGDIVKLHINPSVDWMHKYLEETFEVIDFPTETGVRVKMVGTDPEWQWIIGTADFKIVKEEDE
Ga0181432_10071276	F048570	GAGG	MKIGDLVRCRPRSEDENYDEWLGLVIGEPAIGVTVAVQWVCSDGRGDVETVNHTPEELWVVNENR
Ga0181432_10071277	F029400	GGTGG	MKIGDLVTFCPEAWGTPLKDRPLGVITNVVLDDPRWTSMVTAIFPGDDIPYSSKIEDFEVVNEDW
Ga0181432_10071278	F027156	GGAG	MIPKVGQLLRWYDNFTLERDSPNHDIGIVKEVQFEGVNFFDHDAYEYVVVIDWCKGPHHSLHDQEEYEESIRTNEIVVVV
Ga0181432_10071279	F058991	GGAGG	MQTHADFRIGMLVRWHGDTQDGADIDELGVVIQMPGANWSGNYHIAWSISNTVSHHSPDMIEESLYQGHLEIV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181432_1007127

Overview

Ecosystem & Geography

Associated Families

Sequences