NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1006388

Scaffold Ga0181432_1006388


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1006388 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2755
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F001606Metagenome664N
F014859Metagenome259N

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10063882F001606GGAGGLTYGYDDVTFTSIGTGVAETQLNSGTSLSAPDPAHGFLACIPYQMELGAFTTNQSLLTSLRIQSDDVSVEPKKLVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQALVANTVAPGVGCTVIYDTDGTNGAEQYYTRPTNETASSTTINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHDVGYSEFISPDFNTSMPYRVAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYFTNRDARAGGASNFINFVRYSKN
Ga0181432_10063883F000704AGGTGGMPHETRDLQPSQVKSLVVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDSGLLLNEGNDTAFSQTYTLDPDMTAIIYKISLNFCAVLTCSSYTNGGLSLGGLHIKITERSTNDRLLYENTFQSGAATLGATGTQMHWFTQDIVETIKINKGNPVDILIELETVVTGSNTRQEGYAPVAPLLKTAVMKAFYESGMSLHLHPDLSHADGVFKYKKDRVSMLGQ
Ga0181432_10063884F014859GGAMPMEFSNTKKIGCQCLVSELIPPEIIPIIWFAGISVTVYFFFRKFSDVIKEKIKHTTRKNKTVNTEEAGDQFDNLVNNAPRILDEVNKEITAQREQGVTDQQMKGLLQKKQLLELGTSIPPEVYNIVAKPLVKKLIGFVGKI
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