 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017775 Open in IMG/M |
| Scaffold ID | Ga0181432_1005871 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2854 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F001922 | Metagenome | 617 | Y |
| F003616 | Metagenome | 477 | Y |
| F003617 | Metagenome / Metatranscriptome | 477 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181432_10058711 | F003617 | N/A | SNDRLLYENTFQSGAATLGATGTSLHWFTQDIVETIKIEKGNPINILVELITVVTGTNTRQEGYAPIAPYLKTAVMKRFTPAGIALHLHADLSHADGVFKYKKDRVSLLGQ |
| Ga0181432_10058712 | F000730 | GAG | LVNELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKAEGSIHTDSQIDDLINNAPRILNEINKTIAEQKAQGVSDEQMKGIFQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKAI |
| Ga0181432_10058713 | F001922 | AGG | LVIQKLLIEEGMKRGLKASREYSVSVLGYDFIGLISRLAIFFLTGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWVTQLFTSGFHNITFWQIVQTIAVLIVVVEYMQYDRMLKQTNEKPNVTTTAVFAMIGLGLSLITFPQIIQKVKEMRILNEP |
| Ga0181432_10058716 | F003616 | GAGG | LIWSEKLGHEIGTYTSLGGLRINPKPFIHSTLNTVVTCRICKGTGLNAITHDSGLVTLNKCVLCKGVKRRSNRIE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |