Scaffold Ga0181432_1003708

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1003708
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3456
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y
F058540	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10037081	F005580	AGGAG	MKRTIPHPSVTGMASGLAIASYLNAGRSTTTETGTSLGAVTTMGEGVLKDITDGELGKAFGTLSSNAVGMIASDGGRKTLVTAGGVALLGAFARKQFPNLKLGGSKFYFRL
Ga0181432_10037082	F058540	N/A	MEASKKDFVKPDVSSPLKKRDSYLRVKEDEPILVTVDHVEKTNISTDGGIKEGVRVTCREVIVKKERNVNMENVEEMEFTYTAEQEPKIKESYSTSTFYLLKDFQSASHWPKEGIYYWVWKASDGLRWEEA
Ga0181432_10037083	F005319	AGG	MTTAEFGLIWALSFLLYLLIYTYWIPLKTQKRIETWLRDSESDETLLLALEVIVKRIREQTLIDFEEFMLPQARKNLQKFWSGAMGNVAKEMKNSEEGSQLSMMHNIADSLKNEAWYVQALGSKLLPAIAKTMEKEGSGKVAEVGMGLLEKR
Ga0181432_10037085	F005551	AGGA	MVLGPSESILRVKEGYIYGWSGSKSLTSSAVTLLNYTNPSAFYLTRVTIGLDWSSIGAGEVLSYTINVDGIGLFIEKFVVTDFNLGQQPKMLEFIIPPNSTVKVQATQNANNGAISCMLTGYKV