Scaffold Ga0181432

Basic Information
Taxon OID	3300017775 Open in IMG/M
Scaffold ID	Ga0181432_1003663 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3472
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3472

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005580	Metagenome	396	Y
F014809	Metagenome	260	Y
F049937	Metagenome	146	Y
F058540	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10036631	F005580	N/A	PSISGMASGLAIASYLNAGKITETGTTLGAVRGEGVVKDITDGQLGQAFHTLSTNAINMIASDGGRKTLVTAGSVAILGAFARKRFPNLKLGGSKLYFRL
Ga0181432_10036632	F014809	N/A	MTATTITRTFDATPTDKAYFSLTDNMLSSSLGNIQVPQGSTRISRIDCSFDTFNAKGTTIVARLLGSNMSEQNLVIWGSAGDTADAGAFNGYNSVPVAFPLAGVNNIDLQIAVQFNSGGSASASGGAVTLYFE
Ga0181432_10036634	F049937	GGA	MTLAPSEAILRVKEGYIYGWSGSKDLSASAVTLLNYTNPSEYFLTRIMIGLDWSGMSASETISYTIQVDGINLFVEKSVIGDVGVVGAIMQPKMFEFVIPPNSTVKVLGTQSANNGSISCMLTGYKI
Ga0181432_10036636	F005319	AGG	MSDTLFAIIWILSFGLYFLIYTYHIPRMTQKRIENWLRDSESDDTLLLALEVIVKRIREQTLVDFEEFMLPQARKNLQKFFSGAMGNVAKEMKDSPEGSHMSMMHNVAKELEGAPWYIQMLGSKLMPVLAEASQKGSPNIKPPLGMGLQK
Ga0181432_10036638	F058540	N/A	MDASNKELVKPDISSPLKKRDSYLRVKEDDMTLVTVDQVEKVNISTDGGIKEGVRVTCREVITKENLDKDGEKIFEYIADSEPKIKESYSTSSFYLLKDFLSASHWPKEGIFYWVWKASDGLRWEEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181432_1003663

Overview

Ecosystem & Geography

Associated Families

Sequences