NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1002602

Scaffold Ga0181432_1002602


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1002602 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4024
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003616Metagenome477Y
F020019Metagenome226Y
F043987Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10026021F043987N/AHMSNYACAMNKNFLKLPSEHFWILTKREKSQLLTELKRRVEVLS
Ga0181432_100260210F020019N/AGFFNIKFPDTLPEWVTKLFTTGYNGIAFWQILQVTAILLVIVEYMQYDRMLKEKNQKPNATSQAVFLIIAIALSLMVFPQTIQKIKEMRIINGQ
Ga0181432_10026027F003616AGGAMIWSEKLGHEIGTYNSLGGLRINPKPFIHSTLNTIVTCRICKGTGLNAITHDSGLVTLNKCVLCKGIKRRSNRIG

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