NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1002015

Scaffold Ga0181432_1002015


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1002015 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4461
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F001922Metagenome617Y
F003616Metagenome477Y
F003617Metagenome / Metatranscriptome477Y
F004658Metagenome429Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10020151F003617N/AYPRVFSDTDSGLLLNEGSDTAFNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLNIGGLHIRITERSTNNRLLYENTFQSGAATLGATGTSMHWFTQDIVETIKINKGNPVDIQLNLVTVVTGTNTRQEGYAPLAPVLKTAVLKQFFESGISLHLHPDLSHADGVFKYSKQRVSNLG
Ga0181432_100201510F004658N/AQKIFDFFKANNAAKDVLIGAVSFIAGGFVLNKIVKRDEDQDEEEE
Ga0181432_10020152F000730N/AMQMACLSIPNRESVILVSELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFRQTNLTRKKAESSGHTDGQIDDLINNAPRILNEINKTIAEQKSAGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKAI
Ga0181432_10020153F001922AGGMVIQKLLVEEGMKRGLKASREYSVSVLGYDFVGLISRLAIFFLTGFLINSYFAATIQGGSWLNSLAGFFGLNFPTTLPEWVTKLFTTGFHNITFWQIVQIIAVLIVVVEYMQYDRMLKQTNEKPNVTTGAVFAMIGLGLSLITFPQIIQKVKEMRILNGQT
Ga0181432_10020156F003616AGGMIWSEKLGHEIGTYNSLGGLRINAKPFIHSTVNTIVTCRICKGTGLNAITHDSGMVTLNKCVLCKGDKRRSNRI
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