Scaffold Ga0181432_1001357

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1001357
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5234
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F013596	Metagenome / Metatranscriptome	270	Y
F055296	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10013571	F007837	N/A	LVSGLAVLPKVSARNLDLKLTQVTDLKTTAAPLIVNYPASYQSLSNSVIIDNQDAANAVTVRFNRSVNVITIGPSNFRTFNDTWNEQIDLTGPSTNTQVTAQISPLTQISPYGQGVTN
Ga0181432_100135710	F007837	N/A	VIDLKTTANPLIVNYAAAYQSLSNSLLIDNQDAANAVTLRLNRSVNVITIGPSNFRTFNDAWIEQIDLTGPSTNTQVTAQISPLHQISPYGQGVTN
Ga0181432_10013576	F055296	N/A	MIEMDTKLRSFQVENMAKYDKFREIQQSRNKKIGQRLNELIEKEVKEADPQFKELTPIRSKDAPNIIIPNPFVLDQFHSLPKWIEYLQTLTKGEHDKLYTHLIALKNITHEFEDYRLD
Ga0181432_10013577	F013596	N/A	MEVFAESLTILSIVVSMSVCAVLIARIYRKNSALDPKITNKLRKQQEEYISEVERKNRSLQNKLNSMQKGPVLSQTGDLDSVLPELLGQLDGVLPKWATKFIKGQPDLVNTVIEYAKEHPEKAKEFIGKFVKIGPSAKTPTDATLLGL