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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017775 Open in IMG/M |
| Scaffold ID | Ga0181432_1001237 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5476 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001922 | Metagenome | 617 | Y |
| F003616 | Metagenome | 477 | Y |
| F004658 | Metagenome | 429 | Y |
| F022118 | Metagenome | 216 | Y |
| F047719 | Metagenome / Metatranscriptome | 149 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181432_100123710 | F004658 | AGAAGG | MPEYLKKLYDFFKTSNTAKDVLIGAVSFVAGGYILNKIVKRDEDE |
| Ga0181432_100123712 | F047719 | GGA | MSEIEEPDLLKTGIRLIHQRYCLKCGKILPTELKRNFIHNCEKPDFLL |
| Ga0181432_100123713 | F022118 | N/A | MSAITIPDFKCSKQSSHGREERIAFIISEVKKDPDYHFEGAAYTKERCSNLAGIEDTINQCLRMMYYAPQTRKDITEQILMELKII |
| Ga0181432_10012373 | F001922 | AGG | LVIQKLLIEEGMKRGLKASREYSVSVLGYDFIGLISRLAIFFLTGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWTTKLFTTGFHNITFWQIVQTIAVLIVVVEYMQYDRMLKQTNEKPNVTTTAVFAMIGLGLSLITFPQIIQKVKEMRILNES |
| Ga0181432_10012376 | F003616 | GAGG | LIWSEKLGHEIGTYNSLGGLRINPKPFIHSTQNTIVTCRICKGTGLNAITHDSGLVTLNPCVLCKGDKRRSNRI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |