Scaffold Ga0181432_1000945

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1000945
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6211
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F001922	Metagenome	617	Y
F022118	Metagenome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_10009453	F001922	N/A	MIQKLLVEEGMKRGLKTSREYSVSVLGYDFVGLISRLAIFFLTGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWTTKLFTTGFHNITFWQIVQVISVLIVVMEYMQYDRMLKEKQEKPNITTGAVFAMIGLGLSLITFPQIVQKIQEMRVINGS
Ga0181432_10009454	F000730	AGGA	MVNEFIPPEIIPLVWFSCISVTIYVFFRVFSSTLKEKFRQTNLTRKKAEGSGHTDGQIDDLINNAPRILNEINKTIAEQKAQGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLFGFIKSI
Ga0181432_10009456	F001606	GAGG	LTYGYDDVTTTSLGTAVAETQLNSGTSLSAPDPAHAFLACIPYQSESAAFTVDESLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDGPNDVESYYTRPTNESAGATAANTRTEGGSMTIQGGTEIRSLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAVQPTYTGLGSAANAVTGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRT
Ga0181432_10009457	F001712	AGG	MASSAGQPIATRAQNFVNSLSGRITGYNPFPQTGTVPQTISIDGMFNRYSGGGLLAWLYGMLPIKQLPHKGKAKTLGKSLLTGGVLGGLFSTGNPHNTNLISPSRAITVSSSEVSYT
Ga0181432_10009459	F022118	N/A	MIIIPDFKCSKQSSHGREERIQFIISEVKKHPNFHFEGAAFTKEKCSDLASVDDLINLCLRMMYYAPQTRKDITEQILMELKIT