Scaffold Ga0181432_1000603

Overview

Basic Information

• Taxon OID: 3300017775
• Scaffold ID: Ga0181432_1000603
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7621
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011121	Metagenome / Metatranscriptome	295	Y
F011680	Metagenome	288	Y
F082536	Metagenome	113	N
F105893	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181432_100060310	F105893	AGGA	MSEYNVCLNNMETYAYLMSHFKMTCYEAADEMKKRGLFDESVAIVHEGVSNYMELISKTEREQNETND
Ga0181432_100060312	F082536	AGGAG	MSKQGLAWSKLNEFISKNTGMHMQDLPDFDIHNWVEDDMTEKEIEGIVPDMAWEVLDNAGMDRKTVNTICYGEDCDE
Ga0181432_100060313	F011121	GGA	MPSSPIMKRIKLPDNWAQLQKTMIPDQDTGCYWSVWFDVEVIDEITDEVTNFTYGTAWLMWCAFGDDPSVNDSWGHAEEIDKDCANVLTAIKSVYGVSFHDSIWVEMGTDETFPARAAK
Ga0181432_100060321	F011680	AGGAGG	MENQNLSHMQKKTKKAKKKECVDPCPICSKELHLNHEYTQRVGLLGDFEDVIGWMCPHCSSEFDTDSHLTKFLGEGNIRGEA