NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1000574

Scaffold Ga0181432_1000574


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1000574 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7783
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F001922Metagenome617Y
F032306Metagenome180Y
F033074Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_100057410F000730GAGGMTELIPPEIIPLVWFSVIAVTVYVFFRVFSSTLKEKFRHTTAAKRKEEKNIHTDGQIDDLVNNAPRMVNEISKIIAEQKAAGVPDEQMKGLYQKKQMLELVSNNSEVINIIGKPILKKAVSYINKVF
Ga0181432_100057411F033074AGGTGGMPHLTPSGAGFRVPSQIKFLPTANVLDYGHDVALHLTTVGMTEQAVVFSTSAITRSLDEGGQPLDAFPHVYADTDDGLLLHEGNDSQFSTDYVFNSDMVATVLKFSINVCMGLNVSAHTSGNFNIGNLILTVTELGASNRVIYTNTFASGAANLAGTGTSLHWFTVDVVEPFQVFPNQPIKINLTLDTTLATGTSQAGIVSIAPYLKTAKLKSFNESVFSIHIHAGLGHADDIFRFNMDRVKSEAFND
Ga0181432_10005746F032306AGGMSFSQNLGHISQLGAIRTLPKLFLQSTLNTWVTCPVCRGGGLNSNPHQNGQVDLIICPHCKGKRKYFNDDNR
Ga0181432_10005749F001922AGGLVIQKLLVEEGVKRGLKASREYSVSVLGYDFLGLVSRLAIFFITGFLINAYFQATISGGLWLNTVANLFGMKFPTTLPQWVTQLFTNGYHNITFWQIVQITAIIIVVVEYIQYDKKLKLDDKTKPNPTTMAVFTMIAIGLSLVTFPQMVQKIKEMKIING
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