NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181432_1000142

Scaffold Ga0181432_1000142


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1000142 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13723
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010027Metagenome309Y
F012400Metagenome281Y
F080510Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10001421F010027GGAGGMATNATSNYSFDISDSEVLAPHPKSGLATLVVQGVCTNADGVSFDFIAVNNLDQRYPERFKVNWNGSKARMPEVVGHGLADDVRAGRSVSADLYFTRGARIAIAKKCITLFPLWKQKAGAIGEEAAEETDAS
Ga0181432_100014216F012400AGGAGMKYTIKKFNGDDQYSWAVFRKADVKGLRSPIFYGQATPIINGLDQSEARYHRDRLEKIA
Ga0181432_100014234F080510GAGMSWIHEDGLHRSKHGIILRREQHQAPELNVGDRFFDVDNGRWATLLRIRPEPEALGAPFEALYDGCDTYGPFIGCAMHCDIGEILCESR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.