Scaffold Ga0181358_1147220

Overview

Basic Information

• Taxon OID: 3300017774
• Scaffold ID: Ga0181358_1147220
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 807
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011756	Metagenome / Metatranscriptome	287	Y
F015702	Metagenome	252	Y
F029021	Metagenome	189	Y
F075658	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181358_11472202	F029021	GGAGG	MKEICQFCGWEIARVDWYHRYNNKLICDNCVMDTMSKREREGVSK
Ga0181358_11472203	F015702	AGGGGG	MIKEIELEYTSYNLVKLARDKWGDNATEYLAVALESVITYNQMKVLIDSLKAERTNV
Ga0181358_11472204	F011756	GAG	MSEPRYLSGDEYAHTGGYEDLVNCKECAVEFDRTEYRSDTCSDCEDKIIAREKESK
Ga0181358_11472205	F075658	AGAAGG	MSNVIELRNGSLKRIIVYEVADPQNIAVWGGESAIEALKWYRNSPNGSR