Scaffold Ga0181358_1135162

Overview

Basic Information

• Taxon OID: 3300017774
• Scaffold ID: Ga0181358_1135162
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 855
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009801	Metagenome	312	Y
F056314	Metagenome	137	Y
F075854	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181358_11351622	F009801	GAG	LKMNECKKEYCEFIGNKAFEDDGGWSYEVWQAAQQAAFKRLVNRFRSYGDIDYTGKETANYIEFISEQDVP
Ga0181358_11351623	F075854	AGGAG	VPRPKPPSPLKQRNMRMSDVEWLMFQELGGADWLRKFVRKKAKLPINHYEKQIENERMQKGIL
Ga0181358_11351624	F056314	GGA	MTSRTHTPEDVKAIESKYSLNVWERALGWRKRQMIMKQLDPITNQIRNNTLEEVAKEFDGMKNGGDTTESFAAYVRSMKRA