Scaffold Ga0181358_1131079

Overview

Basic Information

• Taxon OID: 3300017774
• Scaffold ID: Ga0181358_1131079
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 872
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181358_11310791	F049561	AGAAG	MTKIKVELEETDIFNAIKKIIDHPNRVEIAKALTSIIAPNERLSSIFFKTYFMGNAPEVLLDGTMITVNPRDLSYKANVEGMKRIGLLNISGHATALIKEFKGFGDYTTYLVNFMNVDDNDETFEDTGFVAYNQILSV
Ga0181358_11310792	F096905	AGTAG	MESKVFTSIIGFNFELNLVDNDGQPIRTGARRIDYLSSDTPIVGTKIGGEIWFTNFNEPLLNKIRDYRRRND
Ga0181358_11310793	F098924	N/A	VLIIGEDRTDFQEMLGITEERKDQLMRLAFNSYRNADLFSSSCKLAVAECTHINEVVFVMSVLCKARELECNSLSAILSRTSHGE