Scaffold Ga0181358_1086398

Overview

Basic Information

• Taxon OID: 3300017774
• Scaffold ID: Ga0181358_1086398
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1140
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072277	Metagenome	121	Y
F102814	Metagenome	101	N
F103142	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181358_10863981	F102814	AGGA	MAGTKPRDSQKQRLYDAQRLAGFYDTGEVMTIKEAQKFVNQVLSHQKTKKLHKQYAFWASVYPSKIIVEAGSGNHATMKHRDWELVRLIRLTKSGRNKFIILHEIAHHIVWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFNEKRV
Ga0181358_10863982	F072277	AGGAG	MEVCAKCGVSIGQFEVFPEGVCVKCFAVEFEKEFQSALKIGRFKK
Ga0181358_10863983	F103142	GGAGG	MSLDYKGFEWGERISSDYESVDRFLHEKIVVPEAPSIGDLNGAAEWLAAYASETAEDAQGWANVVAFLILTAESKQKRSAIAEAKRAFAKEKGIPVSQVRIKREAEVIRQGLALIPDKID