Scaffold Ga0181358_1043955

Overview

Basic Information

• Taxon OID: 3300017774
• Scaffold ID: Ga0181358_1043955
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1708
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011152	Metagenome	294	Y
F016529	Metagenome	246	Y
F028163	Metagenome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181358_10439553	F016529	AGGAG	MPLLRFACSICKKLYGDGRKEHLITKGAELTMHEWFAQCSGCGAFSVKLVDDSLVAGLD
Ga0181358_10439554	F011152	N/A	MTISAADEWAIHKRAVDVVFSYSGQLGTTIRYNSKLNNHEQVTEYAESLGAEMIVARYFGLDYDINLSNGKRGADVGQGLEVRWTSYVGGNLIVYPNDRQTDIAVLVVGKSPIYHIAGWLPVSFARRKRFKNPRQDSWWVDQANLNPIETLVRSEYATAAICLLNMQEALW
Ga0181358_10439555	F028163	N/A	LMIGRTLIDGKIVAEFKCGQCDQCQRIEILDRAGYQRDVSGEPILWFCGQCRK