Scaffold Ga0181386_1009682

Overview

Basic Information

• Taxon OID: 3300017773
• Scaffold ID: Ga0181386_1009682
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3294
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003679	Metagenome / Metatranscriptome	474	Y
F073647	Metagenome / Metatranscriptome	120	Y
F084105	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181386_10096821	F003679	N/A	KFKERPINLSRVVKIMFNQKFSGSIRKEHITWWKQYWIKPIYLEILYPKKGWITLVKIYREGKPSIRVITTPTSSTKRELLVYNKLYGKEE
Ga0181386_100968210	F084105	AGGAG	MSKANETNELMLAIEQMLIKNLNASITDHGQMMTDGSEADFTAVIDSKIYNITIEQMENDDE
Ga0181386_100968211	F073647	GGAG	MSNVPKDIHKALGIMFKYKLINEAGMSAYLAKYIRRDNTPRVIQLPKPREATAALEKTLIDVVNRQGNQAFTVSEITQKVEAMVGKTTDSAVRYVLGLMVHKGKAEQIHADGRVLFGKKN