Scaffold Ga0181430_1016455

Overview

Basic Information

• Taxon OID: 3300017772
• Scaffold ID: Ga0181430_1016455
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2468
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F059873	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181430_10164551	F002399	N/A	KSIIGQLRKKYGLKDNTPIHKVEIAMTPEDWQDFSEALTFPNGKPTRGK
Ga0181430_10164553	F004603	AGAAG	MIFTININGHLVDWCYTLNNQEKQYHQTWIPKLSDIQIVTKELNGLTVSEVRKLILEDIQPDIQMVRDNTNQKAKARRQKNV
Ga0181430_10164555	F059873	AGGAGG	MSIDYLTVQIKATTNGDFPDNVKQVTHADIKFSVPCDETKEKKFQKAKDNLLQAVRDVYSLEDQQQVDVAIKYLYFGVNE