Scaffold Ga0187217_1081741

Overview

Basic Information

• Taxon OID: 3300017770
• Scaffold ID: Ga0187217_1081741
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1108
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035078	Metagenome	173	Y
F046640	Metagenome	151	Y
F060341	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187217_10817411	F035078	GAGG	VKEQATKLEIFRSYLLDRVKESRVGAIDLNPDGDPTFEVMPELQNYTWVVDLAKREGVAATPTSGSAGARLTITEEKTNE
Ga0187217_10817413	F046640	GAGG	MKVGDLVRVHLLNDLDWYPALGVFMGYQGRKDGYTSHSFVFVEGKKLRFETMDVKAVK
Ga0187217_10817414	F060341	AGGCGG	MKVGDLVKFKSSSSRSIGLVIETGVYVGNTDVKICWDGKGIYTEYSKTLEVINEAR