Scaffold Ga0187217_1042909

Overview

Basic Information

• Taxon OID: 3300017770
• Scaffold ID: Ga0187217_1042909
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1587
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F039591	Metagenome	163	Y
F062168	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187217_10429091	F000375	AGGAG	MTKMYDLEPMIMDCWHVCDDLQVVFRQIGDGERDPTQDELMNALIGMQQLYEWKFEQLFNKYEEKLRDKE
Ga0187217_10429094	F039591	GAGG	MKLMFLLIWFNAVPEQGVRYHHLGTFENETKCMTELRIASVLVNDKLETIECIGVRIRD
Ga0187217_10429095	F062168	AGGA	MNMTSKGDLKDFLKDMGLESVHPKPSATKPDYMQPGYYVDPRNANGEVPF