Scaffold Ga0187221_1041562

Overview

Basic Information

• Taxon OID: 3300017769
• Scaffold ID: Ga0187221_1041562
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1510
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F022198	Metagenome	215	N
F062252	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187221_10415621	F062252	N/A	MNISNAVETIIQTRDFCGNESEALRDWEAENGTLSEHQRAQVWQGVKEEWKLWQLKANVQHALTDAERLQAFSDIENA
Ga0187221_10415622	F006684	N/A	MYKIIISYIIASAIALGLLNQAVNKAQEDIETLAGVLMHHSDTLEDHRGVLLQMIDDLTITPM
Ga0187221_10415625	F009110	GAG	MTESMITSAVRYMESIKDKVPPAGEDDIIVKPGTTHMRTLGIDPHEAVKAVDKLKATGLMVKDACEQVGMTRSQYYKTKKGITNRK
Ga0187221_10415626	F022198	AGGA	MKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFSVSGFMLIAPGRCLAIHENGNIAPLRLKESYGDRVLASVI