Scaffold Ga0187220_1024357

Overview

Basic Information

• Taxon OID: 3300017768
• Scaffold ID: Ga0187220_1024357
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1820
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060813	Metagenome	132	N
F069343	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187220_10243572	F060813	GAGG	MTTKTVKYFVYTQTNMMGKTGEFDTAKEAIKWAKENVYAFDYVKERKDDWEDLFFELLVGIGKGDCKYV
Ga0187220_10243574	F069343	AGG	LIVSFNKNHIIEIQEFVWDFFDQDGQFVADKTIKDKDDLISTVENNFGSMGVDIAKDEIFAIETGDHFS
Ga0187220_10243576	F069343	GAG	MSYMKNFMMEVQEFVWDFFDQDGQFVADETIKDKDDLISVVENNYGSMCAKVAKEEIFAIETSDHF